Emre Kocakavuk, Kevin J. Anderson, Frederick S. Varn, Kevin C. Johnson, Samirkumar B. Amin, Erik. P. Sulman, Martijn P. Lolkema, Floris P. Barthel & Roel G. W. Verhaak
Nature Genetics, 2021, May 27, DOI: https://doi.org/10.1038/s41588-021-00874-3
Daniel L. Cameron, Nina Jacobs, Paul Roepman, Peter Priestley, Edwin Cuppen, Anthony T. Papenfuss
Bioinformatics, 2021. May 11, DOI: https://doi.org/10.1093/bioinformatics/btab343
Paul Roepman, Ewart de Bruijn, Stef van Lieshout, Lieke Schoenmaker, Mirjam C. Boelens, Hendrikus J. Dubbink, Willemina RR. Geurts-Giele, Floris H. Groenendijk, Manon MH. Huibers, Mariëtte EG. Kranendonk, Margaretha GM. Roemer, Kris G. Samsom, Marloes Steehouwer, Wendy WJ. de Leng, Alexander Hoischen, Bauke Ylstra, Kim Monkhorst, Jacobus JM. van der Hoeven, Edwin Cuppen
The Journal of Moleculair Diagnostics, 2021, May 5, DOI: https://doi.org/10.1016/j.jmoldx.2021.04.011
Xueqing Zou, Gene Ching Chiek Koh, Arjun Scott Nanda, Andrea Degasperi, Katie Urgo, Theodoros I. Roumeliotis, Chukwuma A. Agu, Cherif Badja, Sophie Momen, Jamie Young, Tauanne Dias Amarante, Lucy Side, Glen Brice, Vanesa Perez-Alonso, Daniel Rueda, Celine Gomez, Wendy Bushell, Rebecca Harris, Jyoti S. Choudhary, Genomics England Research Consortium, Josef Jiricny, William C. Skarnes & Serena Nik-Zainal
Nature Cancer, 2021 April 26, DOI: https://doi.org/10.1038/s43018-021-00200-0
Teodora Radonic, MD, PhD, W. R. R. Geurts-Giele, PhD,b Kris G. Samsom, MD, Guido M. J. M. Roemen, BSc,Jan H. von der Thüsen, MD, PhD, Erik Thunnissen, MD, PhD, Isabelle C. Meijssen, MSc, Hein F. B. M. Sleddens, BSc, Winand N. M. Dinjens, Prof, Mirjam C. Boelens, PhD, Karin Weijers, MSc,Ernst Jan M. Speel, Prof,d, Stephen P. Finn, Prof, Cathal O’Brien, PhD, Tom van Wezel, PhD, Danielle Cohen, MD, PhD, Kim Monkhorst, MD, PhD, Paul Roepman, PhD,j H. J. Dubbink, PhD
Journal of Thoracic Oncology, 2021 February 12, DOI: 10.1016/j.jtho.2021.01.1619
Pauline A. J. Mendelaar, Marcel Smid, Job van Riet, Lindsay Angus, Mariette Labots, Neeltje Steeghs, Mathijs P. Hendriks, Geert A. Cirkel, Johan M. van Rooijen, Albert J. Ten Tije, Martijn P. Lolkema, Edwin Cuppen, Stefan Sleijfer, John W. M. Martens & Saskia M. Wilting
Nature Communications 2021 January 25, DOI: 10.1038/s41467-020-20887-6
Thomas BK Watkins, Emilia L Lim, Marina Petkovic, Sergi Elizalde, Nicolai J Birkbak, Gareth A Wilson, David A Moore, Eva Grönroos, Andrew Rowan, Sally M Dewhurst, Jonas Demeulemeester, Stefan C Dentro, Stuart Horswell, Lewis Au, Kerstin Haase, Mickael Escudero, Rachel Rosenthal, Maise Al Bakir, Hang Xu, Kevin Litchfield, Wei Ting Lu, Thanos P Mourikis, Michelle Dietzen, Lavinia Spain, George D Cresswell, Dhruva Biswas, Philippe Lamy, Iver Nordentoft, Katja Harbst, Francesc Castro-Giner, Lucy R Yates, Franco Caramia, Fanny Jaulin, Cécile Vicier, Ian PM Tomlinson, Priscilla K Brastianos, Raymond J Cho, Boris C Bastian, Lars Dyrskjøt, Göran B Jönsson, Peter Savas, Sherene Loi, Peter J Campbell, Fabrice Andre, Nicholas M Luscombe, Neeltje Steeghs, Vivianne CG Tjan-Heijnen, Zoltan Szallasi, Samra Turajlic, Mariam Jamal-Hanjani, Peter Van Loo, Samuel F Bakhoum, Roland F Schwarz, Nicholas McGranahan, Charles Swanton
Nature 2020 November 5. DOI https://doi.org/10.1038/s41586-020-2698-6
Samsom K G, Levy S, van Veenendaal L M, Roepman P, Kodach L L, Steeghs N, Valk G D, Dercksen M W, Kuhlmann K F D, Verbeek W H M, Meijer G A, Tesselaar M E T & van den Berg J G
Histopathology, 2020 September 15. DOI: 10.1111/his.14252
Ponte, D and Supek, F
Nature Genetics, 2020 August 3. DOI https://doi.org/10.1038/s41588-020-0674-6
Mankor JM, Paats MS, Groenendijk FH, Roepman P, Dinjens WNM, Dubbink HJ, Sleijfer S, CPCT Consortium, Cuppen E, Lolkema MPJK
BJC British Journal of Cancer 2020 March 12. DOI: 10.1038/s41416-020-0762-5. PMID: 32094484
Andrea Degasperi, Tauanne Dias Amarante, Jan Czarnecki, Scott Shooter, Xueqing Zou, Dominik Glodzik, Sandro Morganella, Arjun S. Nanda, Cherif Badja, Gene Koh, Sophie E. Momen, Ilias Georgakopoulos-Soares, João M. L. Dias, Jamie Young, Yasin Memari, Helen Davies & Serena Nik-Zainal
Nature Cancer 2020 Feb. DOI: 10.1038/s43018-020-0027-5. PMID: 32118208
Pleguezuelos-Manzano C, Puschhof J, Rosendahl Huber A, van Hoeck A, Wood H, Nomburg JL, Gurjao C, Manders F, Dalmasso G, Stege P, Paganelli F, Geurts MH, Beumer J, Mizutani T, van der Linden R, van Elst S, The Genomics England Consortium, Top J, Willems R, Giannakis M, Bonnet R, Quirke P, Meyerson M, Cuppen E, van Boxtel R, Clevers H
Nature 2020 Feb. DOI: 10.1038/s41586-020-2080-8.PMID: 32106218
Nguyen L, van Hoeck A, Cuppen E
BioRxiv 2020 Jan. doi: https://doi.org/10.1101/2020.01.13.905026
Aydemirli MD, Corver W, Beuk R, Roepman P, Solleveld-Westerink N, van Wezel T, Kapiteijn E, Morreau H
MDPI Open Access Journals 2019 aug; DOI: 10.3390/cancers11081185. PMID: 31443247
Driehuis E, van Hoeck A, Moore K, Kolders S, Francies HE, Gulersonmez MC, Stigter ECA, Burgering B, Geurts V, Gracanin A, Bounova G, Morsink FH, Vries R, Boj S, van Es J, Offerhaus GJA, Kranenburg O, Garnett MJ, Wessels L, Cuppen E, Brosens LAA, Clevers H
Proceedings of the National Academy of Sciences of the U S A. 2019 Dec; DOI: 10.1073/pnas.1911273116. PMID: 31818951
Priestley P, Baber J, Lolkema MP, Steeghs N, de Bruijn E, Shale C, Duyvesteyn K, Haidari S, van Hoeck A, Onstenk W, Roepman P, Voda M, Bloemendal HJ, Tjan-Heijnen VCG, van Herpen CML, Labots M, Witteveen PO, Smit EF, Sleijfer S, Voest EE, Cuppen E.
Nature. 2019 Nov;575(7781):210-216. doi: 10.1038/s41586-019-1689-y. Epub 2019 Oct 23. PMID: 31645765
van der Velden DL, Hoes LR, van der Wijngaart H, van Berge Henegouwen JM, van Werkhoven E, Roepman P, Schilsky RL, de Leng WWJ, Huitema ADR, Nuijen B, Nederlof PM, van Herpen CML, de Groot DJA, Devriese LA, Hoeben A, de Jonge MJA, Chalabi M, Smit EF, de Langen AJ, Mehra N, Labots M, Kapiteijn E, Sleijfer S, Cuppen E, Verheul HMW, Gelderblom H, Voest EE.
Nature. 2019 Oct;574(7776):127-131. doi: 10.1038/s41586-019-1600-x. Epub 2019 Sep 30. PMID: 31570881
Christensen S, Van der Roest B, Besselink N, Janssen R, Boymans S, Martens JWM, Yaspo ML, Priestley P, Kuijk E, Cuppen E, Van Hoeck A.
Nature Communications. 2019 Oct 8;10(1):4571. doi: 10.1038/s41467-019-12594-8. PMID: 31594944
Angus L, Smid M, Wilting SM, van Riet J, Van Hoeck A, Nguyen L, Nik-Zainal S, Steenbruggen TG, Tjan-Heijnen VCG, Labots M, van Riel JMGH, Bloemendal HJ, Steeghs N, Lolkema MP, Voest EE, van de Werken HJG, Jager A, Cuppen E, Sleijfer S, Martens JWM.
Nature Genetics. 2019 Oct;51(10):1450-1458. doi: 10.1038/s41588-019-0507-7. Epub 2019 Sep 30. PMID: 31570896
Oriol Pich, Ferran Muiños, Martijn Paul Lolkema, Neeltje Steeghs, Abel Gonzalez-Perez, Nuria Lopez-Bigas
Nature Genetics. Nov 19, bioRxiv 683268; https://www.nature.com/articles/s41588-019-0525-5
Lisanne F. van Dessel, Job van Riet, Minke Smits, Yanyun Zhu, Paul Hamberg, Michiel S. van der Heijden, Andries M. Bergman, Inge M. van Oort, Ronald de Wit, Emile E. Voest, Neeltje Steeghs, Takafumi N. Yamaguchi, Julie Livingstone, Paul C. Boutros, John W.M. Martens, Stefan Sleijfer, Edwin Cuppen, Wilbert Zwart, Harmen J.G. van de Werken, Niven Mehra, Martijn P. Lolkema
Nature Communications. Nov 2019, bioRxiv 546051; https://www.nature.com/articles/s41467-019-13084-7
Wei Jiao, Gurnit Atwal, Paz Polak, Rosa Karlic, Edwin Cuppen, Alexandra Danyi, Jeroen de Ridder, Carla van Herpen, Martijn P Lolkema, Neeltje Steeghs, Gad Getz, Quaid D Morris, Lincoln D. Stein, PCAWG Pathology & Clinical Correlates Working Grp, ICGC/TCGA Pan-cancer Analysis of Whole Genomes Network
Nature Communications, bioRxiv 214494; https://www.biorxiv.org/content/10.1101/214494v3
Kirsten Kübler, Rosa Karlić, Nicholas J. Haradhvala, Kyungsik Ha, Jaegil Kim, Maja Kuzman, Wei Jiao, Sitanshu Gakkhar, Kent W. Mouw, Lior Z. Braunstein, Olivier Elemento, Andrew V. Biankin, Ilse Rooman, Mendy Miller, Wouter R. Karthaus, Christopher D. Nogiec, Edouard Juvenson, Edward Curry, Mari Mino- Kenudson, Leif W. Ellisen, Robert Brown, Alexander Gusev, Cristian Tomasetti, Martijn P. Lolkema, Neeltje Steeghs, Carla van Herpen, Hong-Gee Kim, Hwajin Lee, Kristian Vlahoviček, Bradley E. Bernstein, Charles L. Sawyers, Katherine A. Hoadley, Edwin Cuppen, Amnon Koren, Peter F. Arndt, David N. Louis, Lincoln D. Stein, William D. Foulkes, Paz Polak, Gad Getz, on behalf of the PCAWG Pathology and Clinical Correlates Working Group, and the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Network
bioRxiv 517565; https://www.biorxiv.org/content/10.1101/517565v1
Daniel L. Cameron, Jonathan Baber, Charles Shale, Anthony T. Papenfuss, Jose Espejo Valle-Inclan, Nicolle Besselink, Edwin Cuppen, Peter Priestley
bioRxiv 781013; https://www.biorxiv.org/content/10.1101/781013v1